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Dog BAC Clone Locations
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Cat BAC Clone Locations

Dog BAC Clone Locations

The list below (Table 1) provides the location of the BAC clones for specific genes in the dog RPCI-81 BAC library from BACPAC Resources.  The Lyons research program will assist researchers in screening the dog BAC library for genes of interest for the devlopment of models of human disease.  Additional clones are being isolated for the genes listed in Table 2 and 3.  Currently, these genes are listed as pools, but once the individual clones are identified, they will be listed on Table 1.  The clones can be purchased from BACPAC Resources or obtained from the Lyons' Laboratory as a collaborative research effort.

This work is supported by funding granted by NIH-NCRR 1 R24 RR16094

Table 1.  Individual Locations of BAC clones in the RPCI - 81 BAC library for genes involved with mammalian disease.

Gene RPCI-81 Location Gene RPCI-81 Location
AGRP 262C11 NFAT5 196O14
AMN 349L11 NM_153217 RefSeq ID 235O13
BRCA1 300B2 PAX3 247J16
DAG1 282E7 PFN2 206H11
DCT 305F5 PK 241B9
EDN3 366E14 PKD1 319J19
EMS1/CTTN 194J16 PRF-1 203E13
est near ppp2r4 226A1 RDS 253P2
forkhead box P2 208L23 RDS 253P2
FUS/TLS 219E10 REV3L 236J19
GLI3 291F22 RHO 319H20
GMPPA 216E1 RPE65 253O18
HCRT2 246M13 SCN4A 243G17
HOX A 247C20 SEC13L1 210A13
HOX B 247C20 SHH 261G11
HOX C 268C11 SKB1 204J21
HOX D 273A19 T 304G1
HUMLY1-A 206M22 TGF-A 322H18
IDAX 238G18 TGF-B 283P12
KIT 265L22 TP53 250C12
KITLG 262M19 TYRP2 305F5
LCK 267E2 unknown est 212E23
MYBPC3 253O18 unknown est 227D19
MYH6 350B11    
NDG 235D5    

 

Table 2.  Pooled locations for BAC clones in the RPCI - 81 BAC library for genes involved with mammalian disease.

Genes Dog BAC Pool 1   Genes Dog BAC Pool 2
mapk1 243M21   atp7a 200P17 224C23 55M19
cecr6 245N9   bmp4 193F14 224F5 57P11
top3a 252I20   bmp5 194I2 224L13 61C17
nf2 253C14   bmp7 194K10 224N8 61G10
pik4 255O10   cdk4 194L15 225G11 61K20
ddt 258M19   chrne 194N9 225I10 65M13
xba 258P10   clcn1 195C24 225P11 65P12
timp3 260I5   cln3 195K13 226E14 65P23
large 264D24   col1a1 195L11 226J20 66L8
pkdrej 264F19   col1a2 195M7 226K1 66L9
acr 271L10   ednrb 196B22 226L2 67L8
d6cr2 271N10   dmd 197E17 228O11 69L13
aco2 272J13   egf 197J4 229M11 69M10
pd6fb 276D20   f8 199C18 230J16 71F5
sox10 276G12   fgf1 200C2 230J22 71H11
acrosin 277G16   fgf2 200D3 230L24 71I7
mb 278D10   fgfr1 200L15 230P12 71L4
lif 280D23   fgfr3 201B7 231H12 72C8
  280H9   fgfr3 201D2 231O6 72L7
  284C5   fgfr4 201F9 232O4 75I17
  284H5   glb1 201M20 233I22 75I24
  284N5   hcrt 201O5 234H6 75K10
  286G23   hexa 201P13 235I22 75N12
  291L12   hexb 202E15 236C8 75N6
  292F23   hr 202E5 236F5 75P6
  297P21   lyst 202H1 236H4 77I14
  303P11   mdm2 202O20 236I9 77N18
  303P11   mhl2 203D22 236K24 77N8
  306P5   pde6a 203G5 237L2 78A12
  307B22   pde6b 203M21 237O6 78B7
  307G2   pd6fa 204O24 238G13 78H8
  308F18   pvr 204O7 238J11 78J6
  308G18   ramp3 205I22 240C21 78L4
  311O22   rp1 205O4 240H14 78N14
  318J19   rp2 206C12 240O3 83B4
  319G8   ryr2 206M15 49A14 83G3
  323I22   sod1 207A18 49C10 84B13
  323I22   tnn13 207E6 49D10 84C17
  328J5   tpm1 207G15 49D17 85O1
      ve6f 208K13 49D24 87N3
      ve6fr flt 209B13 49D3 89L18
      ve6fr kdr 209F20 49F23 90D18
      amh 210B3 49G17 90M9
      bmp15 211K5 49O22 96C4
      bmp 2 212P8 51J22 96I8
      xdh 213B17 51J23  
      bmp6 213E10 53D22  
      chrn6 214G11 53G2  
      ed1 215G3 53L12  
      gucy2d 215J13 54A15  
      ldl 215M9 54F8  
      lrat 216H11 54G16  
      pax6 216M16 54M5  
      pfkm 216N24 54O23  
      ppar6 217L20 55B1  
      pth 219G13 55C6  
      slc7 a9 220J13 55H9  
      vhl 222I22 55K16  

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