| The list below (Table 1) provides the location
of domestic dog microsatellites that have been identified within 5 kb
of the gene of interest. The locations corresponds to the nucleotide
position the genome seqeunce of the dog. These postions can be located
at ENSEMBL or
the UC Santa Criz browser.
The microsatellies were selected as perfect dinucleotide repeats with
a minimum repeat of 18 dinucleotide pairs. Primers are now being
developed for these microsatellites and they will be tested for polymorphism
and genotype in the dog reference families. The Lyons' Laboratory
will assist the development of new markers near genes of interest for
investigators interested in developing canine models for human disease.
Contact the Lyons Laboratory at: felinegenome@ucdavis.edu
This work is supported by funding granted by NIH-NCRR 1
R24 RR16094
Table 1. Locations of Dog Gene-Associated
Microsatellites
| Gene Symbol |
Dog Chr |
Forward Primer |
Reverse Primer |
Nucleotide Position |
| ABCA4 |
chr6 |
|
|
56687714 |
| ABCC6 |
chr6 |
|
|
29420860 |
| ABCD2 |
chr27 |
|
|
16976595 |
| ACATE2 |
chrX |
|
|
19309824 |
| aco2 |
chr10 |
|
|
26952740 |
| acr |
chr10 |
|
|
19751590 |
| ACTC |
chr30 |
|
|
5410408 |
| AGC1 |
chr3 |
|
|
54934799 |
| AGRP |
chr5 |
|
|
85014641 |
| AGTR1 |
chr23 |
|
|
46666481 |
| AICDA |
chr27 |
|
|
40054587 |
| AIPL1 |
chr5 |
|
|
33800619 |
| AKAP10 |
chr5 |
|
|
43277776 |
| ALMS1 |
chr17 |
|
|
52215517 |
| AMACR |
chr4 |
|
|
76990781 |
| AMH |
chr20 |
|
|
59809821 |
| AMHR2 |
chr27 |
|
|
4805127 |
| APC |
chr3 |
|
|
3094579 |
| AQP2 |
chr27 |
|
|
7750341 |
| ARSA |
chr10 |
|
|
19830206 |
| ATP6V0A4 |
chr16 |
|
|
15656166 |
| ATP6v1B1 |
chr10 |
|
|
72648558 |
| ATXN7 |
chr20 |
|
|
30167616 |
| AVP |
chr24 |
|
|
21200233 |
| AVPR2 |
chrX |
|
|
124809269 |
| B3GAT1 |
chr5 |
|
|
3703910 |
| BBS5 |
chr36 |
|
|
17345872 |
| BCOR |
chrX |
|
|
34445338 |
| BGN |
chrX |
|
|
124388537 |
| BMP1 |
chr25 |
|
|
38091873 |
| BMP10 |
chr10 |
|
|
71101338 |
| BMP15 |
chrX |
|
|
43587538 |
| BMP2 |
chr24 |
|
|
18229507 |
| BMP3 |
chr32 |
|
|
8187160 |
| BMP4 |
chr8 |
|
|
32897857 |
| BMP5 |
chr12 |
|
|
26064448 |
| BMP6 |
chr35 |
|
|
10700326 |
| BMS1L |
chr28 |
|
|
7229302 |
| BRCA1 |
chr9 |
|
|
12634114 |
| BRCA1 |
chr9 |
|
|
12668029 |
| BRCA2 |
chr25 |
|
|
10731711 |
| CA2 |
chr29 |
|
|
34991681 |
| CACNA1B |
chr9 |
|
|
40530953 |
| CACNA1F |
chrX |
|
|
42138767 |
| CACNB4 |
chr19 |
|
|
56223875 |
| CAV3 |
chr20 |
|
|
12232599 |
| CCNB1IP1 |
chr15 |
|
|
20674540 |
| CD3E |
chr5 |
|
|
18377551 |
| CDH23 |
chr4 |
|
|
25483304 |
| CDH3 |
chr5 |
|
|
84000220 |
| CDK4 |
chr10 |
|
|
4876690 |
| cecr6 |
chr27 |
|
|
47839035 |
| CENTA1 |
chrUn |
|
|
2058600 |
| CHAT |
chr28 |
|
|
4497058 |
| CHL1 |
chr20 |
|
|
19827767 |
| CHM |
chrX |
|
|
69736688 |
| CHN2 |
chr14 |
|
|
44778626 |
| CHRNA2 |
chr25 |
|
|
33155576 |
| CHRNB1 |
chr5 |
|
|
35342616 |
| CHRNE |
chr5 |
|
|
34680564 |
| CHRNG |
chr25 |
|
|
47232731 |
| CIAS1 |
chr8 |
|
|
3228415 |
| CKM |
chr1 |
|
|
112448442 |
| CLCN1 |
chr16 |
|
|
12090820 |
| CNGA1 |
chr13 |
|
|
46954183 |
| CNGA3 |
chr10 |
|
|
47490372 |
| CNGB1 |
chr2 |
|
|
59255088 |
| CNGB3 |
chr29 |
|
|
35781431 |
| COL11A1 |
chr6 |
|
|
49025325 |
| COL1A1 |
chr9 |
|
|
18861213 |
| COL1A2 |
chr14 |
|
|
22431680 |
| COL2A1 |
chr27 |
|
|
9789231 |
| COL6A3 |
chr25 |
|
|
51078682 |
| COX10 |
chr5 |
|
|
40851194 |
| CPGL2 |
chr1 |
|
|
7764732 |
| CRB1 |
chr7 |
|
|
8088736 |
| CREM |
chr2 |
|
|
4781326 |
| CRFG |
chr2 |
|
|
34547300 |
| CRX |
chr1 |
|
|
110486880 |
| CRYAA |
chr31 |
|
|
39602753 |
| CRYBA1 |
chr9 |
|
|
35977852 |
| CRYBB3 |
chr26 |
|
|
22420857 |
| CRYGB |
chr37 |
|
|
19414178 |
| CRYGD |
chr37 |
|
|
19398013 |
| CYLD |
chr2 |
|
|
65268306 |
| CYP1B1 |
chr17 |
|
|
33131346 |
| CYP2E1 |
chrUn |
|
|
8249660 |
| DCT |
chr22 |
|
|
48254468 |
| ddt |
chr26 |
|
|
30562289 |
| DLK1 |
chr8 |
|
|
71888964 |
| DMD |
chrX |
|
|
26402338 |
| DMPK |
chr1 |
|
|
112068017 |
| DNAI1 |
chr11 |
|
|
52521075 |
| DNMT3B |
chr24 |
|
|
25031482 |
| DTNA |
chr7 |
|
|
57770524 |
| DTNB |
chr17 |
|
|
22779816 |
| DUSP22 |
chr35 |
|
|
3671863 |
| DYSF |
chr17 |
|
|
53860709 |
| ED1 |
chrX |
|
|
56958743 |
| EDAR |
chr10 |
|
|
38163869 |
| EDN3 |
chr24 |
|
|
46981906 |
| EDNRB |
chr22 |
|
|
34354555 |
| EFEMP1 |
chr10 |
|
|
60070364 |
| EGF |
chr32 |
|
|
33114602 |
| egfr |
chr18 |
|
|
8775006 |
| ELOVL4 |
chr12 |
|
|
43806893 |
| EPHA3 |
chr33 |
|
|
3787037 |
| ERCC6 |
chr28 |
|
|
4391497 |
| EXT1 |
chr13 |
|
|
20297242 |
| EXT2 |
chr18 |
|
|
55454188 |
| FAT |
chr16 |
|
|
45836512 |
| FBXO25 |
chr25 |
|
|
40516589 |
| FCMD |
chr11 |
|
|
62811420 |
| FGA |
chr15 |
|
|
55270047 |
| FGF1 |
chr2 |
|
|
38105923 |
| FGF2 |
chr19 |
|
|
20475302 |
| FGFr1 |
chr16 |
|
|
28899757 |
| FGFr2 |
chr28 |
|
|
34086989 |
| FGFR3 |
chr3 |
|
|
65286324 |
| FGFr4 |
chr4 |
|
|
39454838 |
| FKRP |
chr1 |
|
|
111399327 |
| FLNC |
chr14 |
|
|
10347314 |
| FLT1 |
chr25 |
|
|
14376758 |
| FMR1 |
chrX |
|
|
119327186 |
| FOS |
chr8 |
|
|
51245364 |
| FOXD3 |
chr5 |
|
|
49873450 |
| FZD4 |
chr21 |
|
|
15716691 |
| G6PD |
chrX |
|
|
125277788 |
| GAA |
chr18 |
|
|
29162736 |
| GAB2 |
chr21 |
|
|
23611933 |
| GALC |
chr8 |
|
|
62203297 |
| galgt2 |
chr9 |
|
|
17990223 |
| GAS8 |
chr5 |
|
|
66664799 |
| GATA3 |
chr2 |
|
|
28673254 |
| GBAS |
chr6 |
|
|
3202848 |
| GBE1 |
chr31 |
|
|
8973873 |
| GCK |
chr16 |
|
|
3195227 |
| gdap1l1 |
chr24 |
|
|
34729819 |
| GDF2 |
chr4 |
|
|
38193948 |
| GDF5 |
chr24 |
|
|
27325669 |
| GDF8 |
chr37 |
|
|
3694985 |
| GFRA1 |
chr28 |
|
|
29824854 |
| GFRA2 |
chr25 |
|
|
38527875 |
| GJA8 |
chr17 |
|
|
61114373 |
| GJB6 |
chr25 |
|
|
20909613 |
| GLB1 |
chr23 |
|
|
6795048 |
| GLI3 |
chr18 |
|
|
10915921 |
| GMIP |
chr20 |
|
|
46500200 |
| GNAT1 |
chr20 |
|
|
41986172 |
| GNAT2 |
chr6 |
|
|
43817643 |
| GOLGA3 |
chr26 |
|
|
3345805 |
| GPM6B |
chrX |
|
|
10141051 |
| GPT |
chr13 |
|
|
41054062 |
| GSN |
chr11 |
|
|
75642508 |
| GUCA1A |
chr12 |
|
|
13722860 |
| GUCA1B |
chr12 |
|
|
13728950 |
| GUCY2D |
chr5 |
|
|
35824868 |
| GUSB |
chr6 |
|
|
3466593 |
| HES1 |
chrUn |
|
|
30833247 |
| HEXA |
chr30 |
|
|
38791197 |
| hexb |
chr2 |
|
|
57850635 |
| HEY1 |
chr29 |
|
|
30199192 |
| HM13 |
chr24 |
|
|
23959841 |
| HOOK3 |
chr16 |
|
|
24710007 |
| HOXA |
chr14 |
|
|
42843933 |
| HOXB |
chr9 |
|
|
17456625 |
| HOXD |
chr36 |
|
|
23129542 |
| HR |
chr25 |
|
|
38152274 |
| HRMT1L1 |
chrUn |
|
|
3459694 |
| HSPG2 |
chr2 |
|
|
77983201 |
| IDS |
chrX |
|
|
120575710 |
| IDUA |
chr3 |
|
|
94736525 |
| IKBKAP |
chr11 |
|
|
65447685 |
| IL17R |
chr27 |
|
|
47801199 |
| IL20 |
chr7 |
|
|
8670553 |
| IL22 |
chr10 |
|
|
13565909 |
| IL22R |
chr2 |
|
|
76127232 |
| IL24 |
chr19 |
|
|
15899805 |
| Il2RA |
chr2 |
|
|
30496761 |
| IMPDH1 |
chr14 |
|
|
10563279 |
| INJ2 |
chr27 |
|
|
45598377 |
| INS |
chr18 |
|
|
56680360 |
| INSR |
chr20 |
|
|
54917968 |
| IRF6 |
chr7 |
|
|
11052458 |
| ITGA7 |
chr10 |
|
|
3166776 |
| ITGB1 |
chr2 |
|
|
6749544 |
| ITSN1 |
chr31 |
|
|
31260959 |
| JAG1 |
chr24 |
|
|
14699117 |
| JUN |
chr5 |
|
|
54020014 |
| KDR |
chr13 |
|
|
50573638 |
| KHDRBS2 |
chr12 |
|
|
28874927 |
| KIT |
chr13 |
|
|
50247247 |
| L1CAM |
chrX |
|
|
124770598 |
| lama2 |
chr1 |
|
|
70660569 |
| lamb1 |
chr18 |
|
|
15546355 |
| lamc1 |
chr7 |
|
|
19045339 |
| LARGE |
chr10 |
|
|
33595140 |
| LCK |
chr2 |
|
|
69604210 |
| lif |
chr26 |
|
|
26533247 |
| LMLN |
chr33 |
|
|
31792113 |
| LPL |
chr25 |
|
|
40129569 |
| LRAT |
chr15 |
|
|
55432568 |
| LRP5 |
chr18 |
|
|
59853323 |
| LYZ |
chr10 |
|
|
14421450 |
| MAL |
chr17 |
|
|
37851342 |
| MAOA |
chrX |
|
|
37491536 |
| MASS1 |
chr3 |
|
|
21002995 |
| mb |
chr10 |
|
|
31756606 |
| MBP |
chr1 |
|
|
5812936 |
| MDM2 |
chr10 |
|
|
14020887 |
| MEN1 |
chr18 |
|
|
62706764 |
| MET |
chr14 |
|
|
58195033 |
| MGAT1 |
chrUn |
|
|
5723221 |
| MIP |
chr10 |
|
|
3768149 |
| MITF |
chr20 |
|
|
24722593 |
| MPG |
chr6 |
|
|
41999595 |
| MPZ |
chr38 |
|
|
21421106 |
| MSX1 |
chr3 |
|
|
73409323 |
| MTA1 |
chr8 |
|
|
75696541 |
| MTP |
chr32 |
|
|
24627525 |
| MYBPC3 |
chr18 |
|
|
52614920 |
| MYC |
chr13 |
|
|
28257330 |
| MYF5 |
chr15 |
|
|
26050683 |
| MYH6 |
chr8 |
|
|
6496324 |
| MYH7 |
chr8 |
|
|
6542207 |
| MYL2 |
chr26 |
|
|
11801782 |
| MYL3 |
chr20 |
|
|
44800381 |
| MYO5A |
chr30 |
|
|
20910867 |
| MYO7A |
chr21 |
|
|
24600052 |
| MYOC |
chr7 |
|
|
29959418 |
| MYT1 |
chr24 |
|
|
50620692 |
| NDP |
chrX |
|
|
37784461 |
| nf2 |
chr26 |
|
|
25972730 |
| NID |
chr4 |
|
|
7014440 |
| NOS1 |
chr26 |
|
|
16964616 |
| NOTCH2 |
chr17 |
|
|
59555610 |
| NPC1 |
chr7 |
|
|
67272246 |
| NR2E3 |
chr30 |
|
|
38332368 |
| NRL |
chr8 |
|
|
6954469 |
| NTRKR1 |
chr5 |
|
|
49423403 |
| NXN |
chr9 |
|
|
37599829 |
| NYX |
chrX |
|
|
35679626 |
| OAT |
chr28 |
|
|
36791650 |
| OCIAD2 |
chr13 |
|
|
47769696 |
| ODF3 |
chr18 |
|
|
35904491 |
| OGG1 |
chr20 |
|
|
11330351 |
| OPA1 |
chr23 |
|
|
55206493 |
| OPA3 |
chr1 |
|
|
112215111 |
| OPN1SW |
chr14 |
|
|
10417224 |
| PARD6G |
chr1 |
|
|
3376003 |
| PAX2 |
chr28 |
|
|
16457803 |
| PAX3 |
chr37 |
|
|
31422515 |
| PAX4 |
chr14 |
|
|
11262523 |
| PAX6 |
chr18 |
|
|
46237784 |
| PCDH15 |
chr26 |
|
|
36438521 |
| PDCD2 |
chr12 |
|
|
75441421 |
| PDE1C |
chr14 |
|
|
46890558 |
| PDE4DIP |
chr17 |
|
|
59970066 |
| PDE6A |
chr4 |
|
|
62328252 |
| PDE6B |
chr3 |
|
|
94982326 |
| PELO |
chr4 |
|
|
65608552 |
| PEX1 |
chr14 |
|
|
20617197 |
| PEX7 |
chr1 |
|
|
32339877 |
| PFKL |
chr31 |
|
|
40471433 |
| PFKM |
chr27 |
|
|
9631766 |
| PGM5 |
chr1 |
|
|
91550954 |
| pik4ca |
chr26 |
|
|
32750222 |
| PITX1 |
chr11 |
|
|
24439560 |
| PITX3 |
chr28 |
|
|
17775420 |
| PKD1 |
chr6 |
|
|
40475414 |
| PKD2 |
chr32 |
|
|
14366743 |
| PKP2 |
chr27 |
|
|
19047754 |
| POMT1 |
chr9 |
|
|
45195151 |
| POMT2 |
chr8 |
|
|
53009028 |
| POP4 |
chr1 |
|
|
124030154 |
| PPAP2C |
chr20 |
|
|
61128455 |
| PPARG |
chr20 |
|
|
9083707 |
| PRIM2A |
chr12 |
|
|
27442769 |
| PRKDC |
chr29 |
|
|
3244811 |
| PROS1 |
chr33 |
|
|
4689828 |
| PRPF31 |
chr1 |
|
|
105776814 |
| PRPF8 |
chr9 |
|
|
38409736 |
| PSPC1 |
chr25 |
|
|
21284294 |
| pten |
chr26 |
|
|
39838142 |
| PTH |
chr9 |
|
|
41622146 |
| PTPN1 |
chr24 |
|
|
39909085 |
| PXMP3 |
chr29 |
|
|
27953086 |
| PYGB |
chr23 |
|
|
4484697 |
| RAB38 |
chr21 |
|
|
14804004 |
| RAGB |
chrX |
|
|
47174648 |
| Ramp3 |
chr16 |
|
|
3778992 |
| RB1 |
chr22 |
|
|
5988239 |
| RBM11 |
chr31 |
|
|
14198479 |
| RBP4 |
chr28 |
|
|
10840422 |
| RDH12 |
chr8 |
|
|
44600337 |
| RDH5 |
chr10 |
|
|
3182859 |
| RDS |
chr12 |
|
|
14243788 |
| RET |
chr28 |
|
|
6958009 |
| RGR |
chr4 |
|
|
35696734 |
| RGS9 |
chr9 |
|
|
4825443 |
| RHO |
chr20 |
|
|
8481774 |
| RIMS1 |
chr12 |
|
|
37115107 |
| RLBP1 |
chr3 |
|
|
55221507 |
| ROCK1 |
chr7 |
|
|
69390091 |
| ROM1 |
chr18 |
|
|
64390643 |
| RP1 |
chr29 |
|
|
9146252 |
| RP2 |
chrX |
|
|
40309563 |
| RPE65 |
chr6 |
|
|
78436640 |
| RPGR |
chrX |
|
|
32875265 |
| RPIA |
chr17 |
|
|
40623476 |
| RS1 |
chrX |
|
|
14632898 |
| RYR2 |
chr4 |
|
|
6098502 |
| SAG |
chr25 |
|
|
47890153 |
| SCN4A |
chr9 |
|
|
7788528 |
| SCN8A |
chr27 |
|
|
6261458 |
| SGCA |
chr9 |
|
|
18830500 |
| SGCB |
chr13 |
|
|
48094930 |
| SGCD |
chr4 |
|
|
56753613 |
| SGCE |
chr14 |
|
|
22630118 |
| SGCZ |
chr16 |
|
|
39427938 |
| SH3YL1 |
chr17 |
|
|
3158494 |
| SHB |
chr11 |
|
|
55556505 |
| SHCBP1 |
chr15 |
|
|
11461175 |
| SHH |
chr16 |
|
|
20508198 |
| SILV |
chr10 |
|
|
3357106 |
| SLC3A1 |
chr10 |
|
|
49985079 |
| SLC9A7 |
chrX |
|
|
40104654 |
| SNTA1 |
chr8 |
|
|
33301294 |
| SNTB1 |
chr13 |
|
|
22454405 |
| SNTB2 |
chr5 |
|
|
83549614 |
| SOD1 |
chr34 |
|
|
22437276 |
| sox10 |
chr10 |
|
|
29866186 |
| SOX9 |
chr18 |
|
|
22946802 |
| SPINK5 |
chr2 |
|
|
42888813 |
| SSPN |
chr27 |
|
|
24358948 |
| SYNJ1 |
chr31 |
|
|
30352430 |
| TARSL2 |
chr3 |
|
|
42351680 |
| TBCD |
chrUn |
|
|
6155868 |
| TBX4 |
chr9 |
|
|
27782024 |
| TBX5 |
chr26 |
|
|
14664621 |
| TEAD1 |
chr21 |
|
|
38095857 |
| TGFB1I1 |
chr6 |
|
|
19264242 |
| TIMP3 |
chr10 |
|
|
33887190 |
| timp3 |
chr10 |
|
|
33924035 |
| TITF1 |
chr8 |
|
|
17957302 |
| TNFSF5 |
chrX |
|
|
110069774 |
| TNNI3 |
chr1 |
|
|
105160284 |
| TNNT2 |
chr7 |
|
|
4549568 |
| TNSRSF6 |
chr26 |
|
|
40769481 |
| top3a |
chr5 |
|
|
44263644 |
| tp53 |
chr5 |
|
|
35531248 |
| TPM1 |
chr30 |
|
|
30588142 |
| TRC8 |
chr13 |
|
|
25623088 |
| TRIP13 |
chr34 |
|
|
14466520 |
| TRPM1 |
chr3 |
|
|
40829853 |
| TTN |
chr36 |
|
|
25335619 |
| TTPA |
chr29 |
|
|
16200839 |
| TUBGCP5 |
chr3 |
|
|
34471350 |
| TULP1 |
chr12 |
|
|
7557542 |
| TYR |
chr21 |
|
|
13905039 |
| TYRP1 |
chr11 |
|
|
34676068 |
| UNC119 |
chr9 |
|
|
35356269 |
| UPF3A |
chr22 |
|
|
64149247 |
| USH1C |
chr21 |
|
|
42352067 |
| USH1G |
chr18 |
|
|
25230319 |
| USH3A |
chr23 |
|
|
48583688 |
| USP14 |
chr7 |
|
|
69529282 |
| USP9Y |
chrX |
|
|
35428192 |
| vegf |
chr12 |
|
|
15139541 |
| VHL |
chr20 |
|
|
11053537 |
| VIPR2 |
chr16 |
|
|
22779997 |
| VMD2 |
chr18 |
|
|
64808833 |
| VWF |
chr27 |
|
|
41947740 |
| WFS1 |
chr13 |
|
|
41602956 |
| WSB1 |
chr9 |
|
|
34481975 |
| xbp1 |
chr26 |
|
|
25298397 |
| XDH |
chr17 |
|
|
27797466 |
Please provide suggestions to
the webmaster: felinegenome@ucdavis.edu
|