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Cat BAC Clone Locations
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Cat BAC Clone Locations

Dog BAC Clone Locations

The list below (Table 1) provides the location of the BAC clones for specific genes in the cat RPCI-86 BAC library from BACPAC Resources.  The Lyons research program will assist researchers in screening the cat BAC library for genes of interest for the devlopment of models of human disease.  Additional clones are being isolated for the genes listed in Table 2 and 3.  Currently, these genes are listed as pools, but once the individual clones are identified, they will be listed on Table 1.  The clones can be purchased from BACPAC Resources or obtained from the Lyons' Laboratory as a collaborative research effort.

This work is supported by funding granted by NIH-NCRR 1 R24 RR16094

Table 1.  Individual Locations of BAC clones in the RPCI - 86 BAC library for genes involved with mammalian disease.

Gene Symbol BAC Position
ABCA4 196H13
ABCC6 443A10
AGRN 127N16
AGRP 174O18
AMACR 182D16
Ankyrin repeat 86L21
ASIP 189H5
bmp5 269K3
CDKN2A 311A19
CHN2 555C22
CKM 367F9
COL1A2 494M19
CRX 282I24
CYLD 279N10
DAG1 161P3
DCT 152H14
EDN3 170K2
EDNRB 269D22
FOS 473O9
FUS 56K7
GDF6 320P2
GDF8 72M21
GFRA1 259D21
GFRA2 205C21
GPM6B 536A13
GUCY2D 113H6
HCRTR2 145G18
HES1 144H18
HEY1 185H1
HOXD 135B14
IDAX 63N13
IFNA2 525B20
IL10RB 509B7
IL2RA 395D22
ITSN1 295D18
JUN 466G9
KIT 613J14
KITLG (MGF) 158G13
LCK 207F5
MAGE-H1 80A16
MC1R 248L10
MERTK 281A6
MET 49M22
MITF 85H18
MYBPC3 173M24
MYF5 165N22
MYH6 162L2
MYH7 117B19
NDG 90M16
NFAT5 64D6
NICE-5 73K13
NPC1 123G3
p53 474H17
PAX3 490N23
PAX4 554O6
PAX6 73J4
PDE1C 221B13
PDE6A 242H23
PDE6B 212N5
PFN2 73A13
PK 206E5
PKD1 207P24
PKD2 97N22
PRKDC 263M9
pten 138E21
RAB38 40K24
RDS 149F5
RET 352I3
RFC2 141L11
RHO 212I23
ROM1 166L11
ROXN 51G17
RPE65 173M24
SCN4A 159H8
SCN9A 386P20
SCNA 532E4
SEC13L1 74I23
SHH 270O2
SKB1 62B18
sox10 70K14
SOX9 26J19
SYNJ1 564H6
TGFalpha 105L14
TGFbeta 127N16
TYRP1 252K14
TYRP2 152H14

Table 2.  Pooled locations for BAC clones in the RPCI - 86 BAC library for genes involved with mammalian disease.

Genes BAC Pool 1   Genes BAC Pool 2   Genes BAC Pool 3  
FMR 340 I12   GALC 241 L19   mapk1 337K18  
Fuca1 343 K19   GBE1 241 P2   cecr6 338D19  
INS 344 A3   GCK 242 H20   top3a 339F11  
KIT 345 A3   GSN 247 K2   nf2 343B19  
MAOA 358 M15   GUSB 248 A18   pik4 343G9  
MBP 359 G23   HEXB 254 O10   ddt 343I2  
MEN1 364 H7   IDS 256 P18   xba 343N19  
MIP 368 C6   IDUA 259 A13   timp3 346K19  
MYO5A 368 E9   IL-20 262 C6   large 348F10  
NRL 368 G6   IL-21 262 E22   pkdrej 348H14  
PFKL 368 M7   IL-22 268 I21   acr 349D4  
PITX3 374 K2   INSR 270 B8   d6cr2 351L14  
PRKDC 375 N8   L1CAM 271 D6   aco2 356N20  
Spink5 386 B11   LYZ 273 M19   pd6fb 362E24  
TITF1 386 E11   MERTK 284 K13   sox10 363G17  
TTN 388 A12   MET 579 E17   acrosin 364C22  
  390 E6   ROR1 585 A15   mb 364G17  
  396 K7   SLC3A1 585 N13   lif 367A5  
  399 B7   SLC9A7 588 L13     367G13  
  400 C7   TTPA 600 K2     367J8  
  401 B22     601 H13     369E19  
  405 C14     601 I20     369M6  
  407 N22     603 A22     371I14  
  407 N6     603 E22     377B7  
  412 C21     611 E8     379D4  
  412 G11     613 C17     381O12  
  414 I14           384G17  
  426 O18           437M10  
  427 M22           438G8  
  430 O7           440G17  
  431 M1           440J4  
              442B12  
              442F12  
              443D7  
              447E16  
              459F13  
              459H12  
              460A18  
              471E1  
              475N18  
              478A20  

Table 2.  Pooled locations for BAC clones in the RPCI - 86 BAC library for genes involved with mammalian disease.

Genes
BAC Pool 4
atp7a 481C15 496G6 522O13 547A18
bmp4 481E1 496I5 524L20 547E10
bmp5 481K16 496I6 527O23 547E13
bmp7 481L15 496L18 528C5 547E9
cdk4 481M14 496M2 529A17 547F10
chrne 481M7 496M6 529A2 547G2
clcn1 482B24 496O18 529B8 547H7
cln3 482G19 497D23 529C18 547H9
col1a1 483F16 497M22 529E10 547I3
col1a2 483F19 497O15 529F8 547I4
ednrb 483M22 498F12 529G17 547J4
dmd 484C19 498H13 529H24 547N10
egf 484E11 499B8 529H9 547O7
f8 484I19 499G11 529I13 547P6
fgf1 484I24 499G4 529J6 547P7
fgf2 484J17 499O10 529M21 553A23
fgfr1 484K24 500F13 529M4 553C6
fgfr3 485B14 501H22 529M5 553G5
fgfr3 485F11 502C18 530P19 553H9
fgfr4 485G8 502J15 535A3 553I14
glb1 485J11 502O2 535A8 553I6
hcrt 485M8 503F18 535C20 553L7
hexa 486B18 503M15 535D10 553M6
hexb 486E6 503O14 535D20 553M9
hr 486G11 504M12 535D22 553N24
lyst 486M10 504P5 535D8 553N8
mdm2 486M14 505E13 535E8 553O14
mhl2 487B9 505F3 535F11 553P16
pde6a 487G10 508G4 535H21 553P3
pde6b 487M10 508G8 535H4 559A10
pd6fa 487M11 508L7 535H7 559C7
pvr 488D19 509M7 535H8 559F8
ramp3 488I21 510G12 535I1 559H13
rp1 488L16 510H3 535I6 559H5
rp2 488M20 510O8 535J24 559J1
ryr2 488O17 511C1 535K1 559J13
sod1 488O19 511L7 535L3 559N7
tnn13 489G23 514G3 535N6 560H22
tpm1 490E10 514L20 535N7 560O15
ve6f 490E13 515D7 536H21 565B10
ve6fr flt 490E20 515H2 536O13 565C15
ve6fr kdr 490K8 515I1 536P16 565C23
amh 490L8 515J20 536P18 565F9
bmp15 491J2 515L9 541A6 565G23
bmp 2 491L23 515N1 541B11 565G9
xdh 491M21 515O19 541B17 565I4
bmp6 491M4 515P12 541C16 565J10
chrn6 491P20 516K9 541C4 565K23
ed1 491P5 516N11 541C8 565L10
gucy2d 492M19 518A13 541E14 565L7
ldl 493P20 518A22 541F10 565M4
lrat 494C16 518J21 541F23 565N6
pax6 495G9 518L13 541F7 565O6
pfkm 495L21 520D14 541H19 565P6
ppar6 495M21 520D16 541J1 571F1
pth 495O20 520O12 541L11 571F23
slc7 a9 496F14 521K5 541M9 571K7
vhl 496G13 522N6 541P10 571L15
        571M4
        572D22

 

 

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